Articles with public access mandates - Katerina NastouLearn more
Available somewhere: 13
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
D Szklarczyk, AL Gable, KC Nastou, D Lyon, R Kirsch, S Pyysalo, ...
Nucleic acids research 49 (D1), D605-D612, 2021
Mandates: European Molecular Biology Laboratory, Academy of Finland
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
Nucleic acids research 51 (D1), D638-D646, 2023
Mandates: European Molecular Biology Laboratory, Academy of Finland, European Commission
Cytoscape stringApp 2.0: analysis and visualization of heterogeneous biological networks
NT Doncheva, JH Morris, H Holze, R Kirsch, KC Nastou, Y Cuesta-Astroz, ...
Journal of proteome research 22 (2), 637-646, 2022
Mandates: US National Institutes of Health
The STRING database in 2025: protein networks with directionality of regulation
D Szklarczyk, K Nastou, M Koutrouli, R Kirsch, F Mehryary, R Hachilif, ...
Nucleic Acids Research 53 (D1), D730-D737, 2025
Mandates: Academy of Finland, European Commission
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data
M Koutrouli, K Nastou, P Piera Líndez, R Bouwmeester, S Rasmussen, ...
Bioinformatics 40 (2), btae010, 2024
Mandates: Research Foundation (Flanders), European Commission
S1000: a better taxonomic name corpus for biomedical information extraction
J Luoma, K Nastou, T Ohta, H Toivonen, E Pafilis, LJ Jensen, S Pyysalo
Bioinformatics 39 (6), btad369, 2023
Mandates: Academy of Finland, European Commission
STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature
F Mehryary, K Nastou, T Ohta, LJ Jensen, S Pyysalo
Bioinformatics 40 (9), btae552, 2024
Mandates: Academy of Finland, European Commission
RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature
K Nastou, F Mehryary, T Ohta, J Luoma, S Pyysalo, LJ Jensen
Database 2024, baae095, 2024
Mandates: Academy of Finland, European Commission
Lifestyle factors in the biomedical literature: an ontology and comprehensive resources for named entity recognition
E Nourani, M Koutrouli, Y Xie, D Vagiaki, S Pyysalo, K Nastou, S Brunak, ...
Bioinformatics 40 (11), btae613, 2024
Mandates: European Commission
Improving dictionary-based named entity recognition with deep learning
K Nastou, M Koutrouli, S Pyysalo, LJ Jensen
Bioinformatics 40 (Supplement_2), ii45-ii52, 2024
Mandates: Academy of Finland, European Commission
LSD600: the first corpus of biomedical abstracts annotated with lifestyle–disease relations
E Nourani, EM Makri, X Mao, S Pyysalo, S Brunak, K Nastou, LJ Jensen
Database 2025, baae129, 2025
Mandates: European Commission
Central role of glycosylation processes in human genetic susceptibility to SARS-CoV-2 infections with Omicron variants
F Geller, X Wu, V Lammi, E Abner, JT Valliere, K Nastou, M Rasmussen, ...
medRxiv, 2024
Mandates: European Commission, Business Finland
CoNECo: a Corpus for Named Entity recognition and normalization of protein Complexes
K Nastou, M Koutrouli, S Pyysalo, LJ Jensen
Bioinformatics Advances 4 (1), vbae116, 2024
Mandates: Academy of Finland, European Commission
Publication and funding information is determined automatically by a computer program