Follow
Denis Thieffry
Denis Thieffry
Professor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Paris
Verified email at ens.fr
Title
Cited by
Cited by
Year
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle
A Fauré, A Naldi, C Chaouiya, D Thieffry
Bioinformatics 22 (14), e124-e131, 2006
7872006
Dynamical behaviour of biological regulatory networks—I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
R Thomas, D Thieffry, M Kaufman
Bulletin of mathematical biology 57, 247-276, 1995
7261995
From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli
D Thieffry, AM Huerta, E Pérez‐Rueda, J Collado‐Vides
Bioessays 20 (5), 433-440, 1998
6631998
GOToolBox: functional analysis of gene datasets based on Gene Ontology
D Martin, C Brun, E Remy, P Mouren, D Thieffry, B Jacq
Genome biology 5, 1-8, 2004
4712004
Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis.
L Mendoza, D Thieffry, ER Alvarez-Buylla
Bioinformatics (Oxford, England) 15 (7), 593-606, 1999
4221999
Dynamical behaviour of biological regulatory networks—II. Immunity control in bacteriophage lambda
D Thieffry, R Thomas
Bulletin of mathematical biology 57, 277-297, 1995
3611995
RSAT 2011: regulatory sequence analysis tools
M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ...
Nucleic acids research 39 (suppl_2), W86-W91, 2011
2962011
A logical analysis of the Drosophila gap-gene system
L Sánchez, D Thieffry
Journal of theoretical Biology 211 (2), 115-141, 2001
2952001
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
2892015
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets
M Thomas-Chollier, C Herrmann, M Defrance, O Sand, D Thieffry, ...
Nucleic acids research 40 (4), e31-e31, 2012
2762012
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
2622020
Logical modeling and dynamical analysis of cellular networks
W Abou-Jaoudé, P Traynard, PT Monteiro, J Saez-Rodriguez, T Helikar, ...
Frontiers in genetics 7, 94, 2016
2612016
Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
É Remy, P Ruet, D Thieffry
Advances in Applied Mathematics 41 (3), 335-350, 2008
2542008
Transcription factors drive Tet2-mediated enhancer demethylation to reprogram cell fate
JL Sardina, S Collombet, TV Tian, A Gómez, B Di Stefano, C Berenguer, ...
Cell stem cell 23 (5), 727-741. e9, 2018
2532018
C/EBPα poises B cells for rapid reprogramming into induced pluripotent stem cells
B Di Stefano, JL Sardina, C van Oevelen, S Collombet, EM Kallin, ...
Nature 506 (7487), 235-239, 2014
2512014
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance
Ö Sahin, H Fröhlich, C Löbke, U Korf, S Burmester, M Majety, J Mattern, ...
BMC systems biology 3, 1-20, 2009
2482009
RegulonDB: A database on transcriptional regulation in Escherichia coli
AM Huerta, H Salgado, D Thieffry, J Collado-Vides
Nucleic acids research 26 (1), 55-59, 1998
2471998
Mathematical modelling of cell-fate decision in response to death receptor engagement
L Calzone, L Tournier, S Fourquet, D Thieffry, B Zhivotovsky, E Barillot, ...
PLoS computational biology 6 (3), e1000702, 2010
2402010
GINsim: a software suite for the qualitative modelling, simulation and analysis of regulatory networks
AG Gonzalez, A Naldi, L Sanchez, D Thieffry, C Chaouiya
Biosystems 84 (2), 91-100, 2006
2382006
Logical modelling of regulatory networks with GINsim 2.3
A Naldi, D Berenguier, A Fauré, F Lopez, D Thieffry, C Chaouiya
Biosystems 97 (2), 134-139, 2009
2272009
The system can't perform the operation now. Try again later.
Articles 1–20